Level 2 seeks to advance the holistic development of the students from Grades 4-6 in preparation for the secondary education. The following are the goals which the students are expected to achieve upon completion of primary education:

a. strengthen their faith in God;
b. master the basics of the different learning areas;
c. enhance their communication skills in English, Chinese and Filipino;
d. embody the Johnian discipline in all their endeavors;
e. develop their national identity and understand their roots as Filipinos; and
f. lead a healthy lifestyle through engaging in aesthetic and physical activities.